Package: sclValid 0.1.1

sclValid: Ensemble Validation and Ranking of Clustering Methods

Provides methods for evaluating and comparing clustering results, with an emphasis on sample-level clustering where observations are treated as the units being clustered and perturbation is performed by removing samples. The package implements internal, stability, and external validation measures and supports the comparison and ranking of clustering procedures across tuning parameter choices. It is conceptually related to the 'clValid' package, which assesses clustering stability by perturbing features; in contrast, this package focuses on perturbing the samples being clustered, making the validation framework suitable for applications such as single-cell clustering where samples or cells are the primary units of interest. Methods are based in part on Visser and Datta (2025) <doi:10.1002/sim.70331>.

Authors:Owen Visser [aut, cre], Somnath Datta [aut, ctb], Justina Žurauskienė [ctb], Christopher Yau [ctb]

sclValid_0.1.1.tar.gz
sclValid_0.1.1.zip(r-4.7-x86_64)sclValid_0.1.1.zip(r-4.7-arm64)sclValid_0.1.1.zip(r-4.6-x86_64)sclValid_0.1.1.zip(r-4.6-arm64)sclValid_0.1.1.zip(r-4.5-x86_64)
sclValid_0.1.1.tgz(r-4.6-x86_64)sclValid_0.1.1.tgz(r-4.6-arm64)sclValid_0.1.1.tgz(r-4.5-x86_64)sclValid_0.1.1.tgz(r-4.5-arm64)
sclValid_0.1.1.tar.gz(r-4.7-arm64)sclValid_0.1.1.tar.gz(r-4.7-x86_64)sclValid_0.1.1.tar.gz(r-4.6-arm64)sclValid_0.1.1.tar.gz(r-4.6-x86_64)
sclValid_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
sclValid/json (API)

# Install 'sclValid' in R:
install.packages('sclValid', repos = c('https://owenvisser.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/owenvisser/sclvalid/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

clusteringscrna-seq-analysisvalidationcpp

3.30 score 1 stars 180 downloads 19 exports 102 dependencies

Last updated from:f347814198. Checks:15 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK152
linux-devel-x86_64OK180
source / vignettesOK213
linux-release-arm64OK145
linux-release-x86_64OK166
macos-release-arm64OK136
macos-release-x86_64OK330
macos-oldrel-arm64OK115
macos-oldrel-x86_64OK193
windows-devel-arm64OK211
windows-devel-x86_64OK198
windows-release-arm64OK204
windows-release-x86_64OK159
windows-oldrel-x86_64OK129
wasm-releaseOK146

Exports:check_inputmake_scerun_custom_clusteringrun_pcareducerun_raceidrun_rank_aggregationrun_reduction_clusteringrun_validationscale_validationvalidation_apnvalidation_arivalidation_average_distancevalidation_average_distance_meansvalidation_bhivalidation_bsivalidation_connectivityvalidation_dunnvalidation_igpvalidation_silhouette

Dependencies:abindaskpassBiobaseBiocGenericscccdclasscliclueclustercoopcowplotcpp11DelayedArraydeldirDEoptimRdiptestdplyrfarverFateIDflexmixFNNfpcgenericsGenomicRangesggplot2gluegtablegtoolsharmonyhereicaigraphIRangesirlbaisobandjsonlitekernlablabelinglatticeleidenlifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmgcvmnormtmodeltoolsnlmennetopensslpcaMethodspermutepheatmappillarpkgconfigpngprabclusprincurveproxyquadprogR6RaceIDrandomForestRankAggregrappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppProgressRcppTOMLreticulateRhpcBLASctlrlangrobustbaserprojrootRSpectraRtsnerunnerS4ArraysS4VectorsS7scalesSeqinfoSingleCellExperimentsomSparseArraySummarizedExperimentsystibbletidyselectumaputf8vctrsveganviridisLitewithrXVector